PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010184
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 212aa    MW: 23770.1 Da    PI: 10.1873
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010184genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.71.4e-33358458
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                 + Y+eClkNhAa++Ggha+DGCgEfmps +++ +++++l+CaACgCHRnFHRre++
    Cla010184  3 ISYRECLKNHAATVGGHALDGCGEFMPSVTSTpADPTSLNCAACGCHRNFHRREPD 58
                 78**************************99999********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-23359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-28357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.856556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-25119186IPR009057Homeodomain-like
SuperFamilySSF466898.02E-17121186IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-24128185IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVISYRECLK NHAATVGGHA LDGCGEFMPS VTSTPADPTS LNCAACGCHR NFHRREPDDP  60
WPNRRYYPYR LCAPPSPRSS PVKSQSPSSP IPLPIAHIPP PVQFSGPHML VALSTGAPAE  120
EELRRKQRKR KRTKFSGEQK EKMQLFSEKI GWKIGKSEER LVEEFCKEIG IGKRVLRVWM  180
HNNKYMGGKT TQKNRAPQSS EQNGGNDSKQ ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181291871876ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-172LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-172LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135457.11e-128PREDICTED: zinc-finger homeodomain protein 8
SwissprotQ9SEZ12e-60ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A0A0KSP21e-128A0A0A0KSP2_CUCSA; ZF-HD homeobox domain-containing protein
STRINGAT1G69600.14e-58(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-47zinc finger homeodomain 1